species:   Rhsol
pid:       PID0625
parent:    Rhi-milR-17
paralog:   
locus:     KB317786.1:6990-7102
matures:   ['AGACUAAGGCUCAGAUAAUUGCG', 'UUUGCAACCUGAGACCCAGGUUUCU']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317786.1:6990-7102

5 out of bounds
5 alignments
3 proper strand
3 stranded perfect matches

                 **************************                                     ****************************     
GCUCAAUACACUAGCCCCAAGACUAAGGCUCAGAUAAUUGCGCUGAAAAAGCUCAAAUACUCAGAUUGGGCUGUUGUUCAGCUUUUGCAACCUGAGACCCAGGUUUCUCAUGC
...................(((((..(((((((....((((((((((..(((((((.........)))))))....))))))....)))).))))).))..))))).......
-------------------AGACUAAGGCUCAGAUAAUUGCG----------------------------------------------------------------------- l=23 a=0 c
-----------------------------------------------------------------------------------UUUGCAACCUGAGACCCAGGUUUCU----- l=25 a=0 c*
-------------------AGACUAAGGCUCAGAUAAUUGCGC---------------------------------------------------------------------- l=24 a=2 ma
----------------------------------------------------------------------------------UUUUGCAACCUGAGACCCAGGUUUCU----- l=26 a=0 ma*

-------------------AGACUAAGGCUCAGAUAAUUGCGC---------------------------------------------------------------------- l=24 a=2 (ma)
-----------------CAAGACUAAGGCUCAGAUAAUUGC------------------------------------------------------------------------ l=24 a=1 

mb-00011
ax-1001011
ku-01
ss-111110101100
fn-001
